TERG_07707 protein (Trichophyton rubrum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

TERG_07707

Uncharacterized protein. (412 aa)

Predicted Functional Partners:

TERG_04485

0.822

TERG_02452

0.687

TERG_03911

0.649

ERB1

0.615

TERG_05925

0.597

TERG_06392

0.597

TERG_07882

0.588

TERG_00978

0.584

TERG_08467

0.582

TERG_04187

0.581

Your Current Organism:

Trichophyton rubrum

NCBI taxonomy Id: 559305
Other names: T. rubrum CBS 118892, Trichophyton rubrum CBS 118892

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ERB1	TERG_00978	F2SLA3	F2SEC8	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	CLP1_P domain-containing protein.	0.851
ERB1	TERG_02452	F2SLA3	F2SHA0	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	WD_REPEATS_REGION domain-containing protein.	0.982
ERB1	TERG_03911	F2SLA3	F2SPB2	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Ipi1_N domain-containing protein.	0.845
ERB1	TERG_07707	F2SLA3	F2SYQ0	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Uncharacterized protein.	0.615
ERB1	TERG_08467	F2SLA3	F2T0X8	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Uncharacterized protein.	0.825
TERG_00978	ERB1	F2SEC8	F2SLA3	CLP1_P domain-containing protein.	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.851
TERG_00978	TERG_02452	F2SEC8	F2SHA0	CLP1_P domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.985
TERG_00978	TERG_03911	F2SEC8	F2SPB2	CLP1_P domain-containing protein.	Ipi1_N domain-containing protein.	0.954
TERG_00978	TERG_07707	F2SEC8	F2SYQ0	CLP1_P domain-containing protein.	Uncharacterized protein.	0.584
TERG_00978	TERG_08467	F2SEC8	F2T0X8	CLP1_P domain-containing protein.	Uncharacterized protein.	0.999
TERG_02452	ERB1	F2SHA0	F2SLA3	WD_REPEATS_REGION domain-containing protein.	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.982
TERG_02452	TERG_00978	F2SHA0	F2SEC8	WD_REPEATS_REGION domain-containing protein.	CLP1_P domain-containing protein.	0.985
TERG_02452	TERG_03911	F2SHA0	F2SPB2	WD_REPEATS_REGION domain-containing protein.	Ipi1_N domain-containing protein.	0.999
TERG_02452	TERG_07707	F2SHA0	F2SYQ0	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.687
TERG_02452	TERG_08467	F2SHA0	F2T0X8	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.945
TERG_03911	ERB1	F2SPB2	F2SLA3	Ipi1_N domain-containing protein.	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.845
TERG_03911	TERG_00978	F2SPB2	F2SEC8	Ipi1_N domain-containing protein.	CLP1_P domain-containing protein.	0.954
TERG_03911	TERG_02452	F2SPB2	F2SHA0	Ipi1_N domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.999
TERG_03911	TERG_07707	F2SPB2	F2SYQ0	Ipi1_N domain-containing protein.	Uncharacterized protein.	0.649
TERG_03911	TERG_08467	F2SPB2	F2T0X8	Ipi1_N domain-containing protein.	Uncharacterized protein.	0.902