Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
BU52_02065Tat (twin-arginine translocation) pathway signal sequence; Derived by automated computational analysis using gene prediction method: Protein Homology. (398 aa)    
Predicted Functional Partners:
BU52_02045
Sugar phosphate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.938
BU52_02025
Glycosyl hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.937
BU52_02035
UbiA prenyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.936
BU52_02050
Hydrolase TatD; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.934
BU52_02060
Phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.932
BU52_02055
Xylose isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.925
BU52_02040
Xylose isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.919
BU52_02030
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.916
xylB
Xylulose kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.854
BU52_02480
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.791
Your Current Organism:
Streptomyces toyocaensis
NCBI taxonomy Id: 55952
Other names: S. toyocaensis
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