STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BU52_03905Photosystem reaction center subunit H; Derived by automated computational analysis using gene prediction method: Protein Homology. (313 aa)    
Predicted Functional Partners:
BU52_31455
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.640
hemH
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family.
    
  0.632
BU52_03895
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.602
BU52_03900
Acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.587
BU52_29065
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.571
BU52_00130
Glycine/betaine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.567
BU52_11325
Glycine/betaine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.567
BU52_09525
Bacterioferritin; Iron-storage protein, whose ferroxidase center binds Fe(2+) ions, oxidizes them by dioxygen to Fe(3+), and participates in the subsequent Fe(3+) oxide mineral core formation within the central cavity of the protein complex; Belongs to the bacterioferritin family.
   
  
 0.560
BU52_17840
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.479
BU52_27595
Chemotaxis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.473
Your Current Organism:
Streptomyces toyocaensis
NCBI taxonomy Id: 55952
Other names: S. toyocaensis
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