STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BU52_05460Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (415 aa)    
Predicted Functional Partners:
BU52_05465
RNA polymerase subunit sigma-24; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
   0.999
BU52_12950
RNA polymerase sigma70; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
   0.902
BU52_13535
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
   0.898
BU52_07015
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.872
BU52_29260
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
   0.859
BU52_08200
Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
  0.854
BU52_04270
Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
   0.850
BU52_09355
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
   0.815
BU52_13115
RNA polymerase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.
   
   0.797
BU52_14915
RNA polymerase subunit sigma-24; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.
   
   0.797
Your Current Organism:
Streptomyces toyocaensis
NCBI taxonomy Id: 55952
Other names: S. toyocaensis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.