BU52_07625 protein (Streptomyces toyocaensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

BU52_07625

Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (908 aa)

Predicted Functional Partners:

BU52_07015

0.999

BU52_08200

0.967

BU52_16355

0.938

BU52_14685

0.852

BU52_14690

0.852

BU52_14695

0.852

BU52_13750

0.848

ribBA

0.838

BU52_20285

0.804

BU52_08685

0.775

Your Current Organism:

Streptomyces toyocaensis

NCBI taxonomy Id: 55952
Other names: S. toyocaensis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BU52_07015	BU52_07625	BU52_07015	BU52_07625	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
BU52_07015	BU52_08200	BU52_07015	BU52_08200	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
BU52_07015	BU52_08685	BU52_07015	BU52_08685	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
BU52_07015	BU52_13750	BU52_07015	BU52_13750	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
BU52_07015	BU52_14685	BU52_07015	BU52_14685	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	LuxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.629
BU52_07015	BU52_14690	BU52_07015	BU52_14690	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	LuxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.629
BU52_07015	BU52_14695	BU52_07015	BU52_14695	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Regulatory protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.629
BU52_07015	BU52_16355	BU52_07015	BU52_16355	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
BU52_07015	BU52_20285	BU52_07015	BU52_20285	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
BU52_07015	ribBA	BU52_07015	BU52_21255	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.	0.968
BU52_07625	BU52_07015	BU52_07625	BU52_07015	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
BU52_07625	BU52_08200	BU52_07625	BU52_08200	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.967
BU52_07625	BU52_08685	BU52_07625	BU52_08685	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.775
BU52_07625	BU52_13750	BU52_07625	BU52_13750	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.848
BU52_07625	BU52_14685	BU52_07625	BU52_14685	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	LuxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.852
BU52_07625	BU52_14690	BU52_07625	BU52_14690	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	LuxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.852
BU52_07625	BU52_14695	BU52_07625	BU52_14695	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Regulatory protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.852
BU52_07625	BU52_16355	BU52_07625	BU52_16355	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.938
BU52_07625	BU52_20285	BU52_07625	BU52_20285	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.804
BU52_07625	ribBA	BU52_07625	BU52_21255	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.	0.838