Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BU52_08080Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (240 aa)    
Predicted Functional Partners:
BU52_08085
TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.779
BU52_01580
Protein meaA; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.660
BU52_33165
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.560
BU52_01185
2-hydroxy-acid oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.538
BU52_04275
Lactate 2-monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.538
BU52_08075
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.524
BU52_07700
Sulfurtransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.500
BU52_13770
3-phosphoglycerate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
     
  0.500
BU52_25710
Beta-lactamase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.500
BU52_25740
Beta-lactamase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.500
Your Current Organism:
Streptomyces toyocaensis
NCBI taxonomy Id: 55952
Other names: S. toyocaensis
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