STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BU52_08090Pyridoxamine 5'-phosphate oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (141 aa)    
Predicted Functional Partners:
BU52_08095
Oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.842
BU52_24185
Proteasome protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.572
BU52_30485
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.540
BU52_14020
Phosphomethylpyrimidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.534
BU52_08085
TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.498
BU52_10825
Decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.455
BU52_04165
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.446
BU52_33190
F420-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.419
BU52_25880
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.413
Your Current Organism:
Streptomyces toyocaensis
NCBI taxonomy Id: 55952
Other names: S. toyocaensis
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