BU52_10465 protein (Streptomyces toyocaensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

BU52_10465

Tripeptidyl aminopeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (477 aa)

Predicted Functional Partners:

BU52_11515

0.842

BU52_10470

0.792

BU52_10095

0.683

cobN

0.578

BU52_04375

0.551

BU52_21535

0.547

BU52_22605

0.513

BU52_07970

0.499

BU52_18680

0.497

BU52_23285

0.475

Your Current Organism:

Streptomyces toyocaensis

NCBI taxonomy Id: 55952
Other names: S. toyocaensis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BU52_04375	BU52_10465	BU52_04375	BU52_10465	TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Tripeptidyl aminopeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.551
BU52_04375	BU52_21535	BU52_04375	BU52_21535	TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Carboxymuconolactone decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.422
BU52_07970	BU52_10465	BU52_07970	BU52_10465	ATPase AAA; Derived by automated computational analysis using gene prediction method: Protein Homology.	Tripeptidyl aminopeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.499
BU52_07970	BU52_11515	BU52_07970	BU52_11515	ATPase AAA; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.469
BU52_07970	cobN	BU52_07970	BU52_25070	ATPase AAA; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cobalamin biosynthesis protein CobN; With CobST catalyzes the formation of cobyrinic acid a,c-diamide from hydrogenobyrinic acid a,c-diamide in an ATP-dependent manner; involved in porphyrin and chlorophyll metabolism; vitamin B12 metabolism; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.407
BU52_10095	BU52_10465	BU52_10095	BU52_10465	Sulfonate ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Tripeptidyl aminopeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.683
BU52_10095	BU52_11515	BU52_10095	BU52_11515	Sulfonate ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.986
BU52_10465	BU52_04375	BU52_10465	BU52_04375	Tripeptidyl aminopeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.551
BU52_10465	BU52_07970	BU52_10465	BU52_07970	Tripeptidyl aminopeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATPase AAA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.499
BU52_10465	BU52_10095	BU52_10465	BU52_10095	Tripeptidyl aminopeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sulfonate ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.683
BU52_10465	BU52_10470	BU52_10465	BU52_10470	Tripeptidyl aminopeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.792
BU52_10465	BU52_11515	BU52_10465	BU52_11515	Tripeptidyl aminopeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.842
BU52_10465	BU52_18680	BU52_10465	BU52_18680	Tripeptidyl aminopeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATPase AAA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.497
BU52_10465	BU52_21535	BU52_10465	BU52_21535	Tripeptidyl aminopeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Carboxymuconolactone decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.547
BU52_10465	BU52_22605	BU52_10465	BU52_22605	Tripeptidyl aminopeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.513
BU52_10465	BU52_23285	BU52_10465	BU52_23285	Tripeptidyl aminopeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.475
BU52_10465	cobN	BU52_10465	BU52_25070	Tripeptidyl aminopeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cobalamin biosynthesis protein CobN; With CobST catalyzes the formation of cobyrinic acid a,c-diamide from hydrogenobyrinic acid a,c-diamide in an ATP-dependent manner; involved in porphyrin and chlorophyll metabolism; vitamin B12 metabolism; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.578
BU52_10470	BU52_10465	BU52_10470	BU52_10465	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Tripeptidyl aminopeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.792
BU52_11515	BU52_07970	BU52_11515	BU52_07970	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATPase AAA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.469
BU52_11515	BU52_10095	BU52_11515	BU52_10095	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sulfonate ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.986