BU52_11525 protein (Streptomyces toyocaensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

BU52_11525

Serine/threonine protein kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (412 aa)

Predicted Functional Partners:

BU52_17850

0.923

BU52_25765

0.883

BU52_07015

0.833

BU52_11530

0.821

BU52_18685

0.765

prfB

0.756

BU52_18205

0.715

BU52_20715

0.690

BU52_16355

0.629

BU52_00205

0.608

Your Current Organism:

Streptomyces toyocaensis

NCBI taxonomy Id: 55952
Other names: S. toyocaensis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BU52_00205	BU52_07015	BU52_00205	BU52_07015	Peptide-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.893
BU52_00205	BU52_11525	BU52_00205	BU52_11525	Peptide-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Serine/threonine protein kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.608
BU52_00205	BU52_11530	BU52_00205	BU52_11530	Peptide-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Serine/threonine protein kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.604
BU52_00205	BU52_16355	BU52_00205	BU52_16355	Peptide-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.778
BU52_00205	BU52_17850	BU52_00205	BU52_17850	Peptide-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Signal peptide protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.656
BU52_00205	BU52_20715	BU52_00205	BU52_20715	Peptide-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Serine/threonine protein kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.553
BU52_00205	BU52_25765	BU52_00205	BU52_25765	Peptide-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Protein phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.605
BU52_07015	BU52_00205	BU52_07015	BU52_00205	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.893
BU52_07015	BU52_11525	BU52_07015	BU52_11525	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Serine/threonine protein kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.833
BU52_07015	BU52_11530	BU52_07015	BU52_11530	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Serine/threonine protein kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.833
BU52_07015	BU52_16355	BU52_07015	BU52_16355	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
BU52_07015	BU52_17850	BU52_07015	BU52_17850	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Signal peptide protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.893
BU52_07015	BU52_18205	BU52_07015	BU52_18205	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Serine/threonine protein phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.552
BU52_07015	BU52_20715	BU52_07015	BU52_20715	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Serine/threonine protein kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.833
BU52_07015	BU52_25765	BU52_07015	BU52_25765	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Protein phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.552
BU52_07015	prfB	BU52_07015	BU52_11520	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide chain release factor 2; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA.	0.625
BU52_11525	BU52_00205	BU52_11525	BU52_00205	Serine/threonine protein kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.608
BU52_11525	BU52_07015	BU52_11525	BU52_07015	Serine/threonine protein kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.833
BU52_11525	BU52_11530	BU52_11525	BU52_11530	Serine/threonine protein kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Serine/threonine protein kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.821
BU52_11525	BU52_16355	BU52_11525	BU52_16355	Serine/threonine protein kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.629