STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BU52_11645TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (238 aa)    
Predicted Functional Partners:
BU52_11635
Multidrug ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.802
BU52_11640
ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.593
BU52_04010
Carnitine dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the CoA-transferase III family.
       0.580
BU52_13750
Phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.564
BU52_03865
Diguanylate phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.529
BU52_10815
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.529
BU52_00650
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.496
BU52_23480
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.467
BU52_10285
Regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.447
BU52_13170
RNA polymerase sigma70 factor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.446
Your Current Organism:
Streptomyces toyocaensis
NCBI taxonomy Id: 55952
Other names: S. toyocaensis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.