STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BU52_11825NUDIX hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (183 aa)    
Predicted Functional Partners:
BU52_11815
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.881
BU52_11820
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.881
BU52_00815
Dihydrofolate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.853
BU52_00835
3-hydroxy-3-methylglutaryl-CoA synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.765
BU52_11830
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.761
BU52_11835
Amino acid permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.720
BU52_00845
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.678
BU52_02705
Squalene-hopene cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.678
BU52_23590
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.678
BU52_29780
Formate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.630
Your Current Organism:
Streptomyces toyocaensis
NCBI taxonomy Id: 55952
Other names: S. toyocaensis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.