STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BU52_12405TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (189 aa)    
Predicted Functional Partners:
BU52_12410
MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.900
BU52_12400
Aldo/keto reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.796
argH
Argininosuccinate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.734
BU52_12380
Pyridoxamine 5'-phosphate oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.680
argG
Argininosuccinate synthase; Catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the argininosuccinate synthase family. Type 1 subfamily.
       0.672
BU52_12385
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.585
BU52_33455
Asparagine synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.557
BU52_16450
Major facilitator transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.490
BU52_22780
Phenazine biosynthesis protein PhzA/PhzB; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.419
BU52_30165
Asparagine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.411
Your Current Organism:
Streptomyces toyocaensis
NCBI taxonomy Id: 55952
Other names: S. toyocaensis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.