STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BU52_12830Lysophospholipase; Derived by automated computational analysis using gene prediction method: Protein Homology. (275 aa)    
Predicted Functional Partners:
BU52_12835
PadR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.921
BU52_12840
Serine/arginine repetitive matrix protein 1; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.797
BU52_12825
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.732
BU52_06300
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.633
BU52_06835
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.633
BU52_07190
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.633
BU52_26110
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.633
BU52_29900
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.633
BU52_32445
Pectate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.633
BU52_31510
3-hydroxyacyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.629
Your Current Organism:
Streptomyces toyocaensis
NCBI taxonomy Id: 55952
Other names: S. toyocaensis
Server load: medium (56%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.