STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BU52_13585Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (212 aa)    
Predicted Functional Partners:
BU52_13590
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.795
BU52_13600
Cysteine desulfurase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.758
BU52_13595
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.745
BU52_05920
Dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.557
BU52_33440
Strictosidine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.528
BU52_15720
MerR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.511
BU52_33445
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.507
BU52_02545
Saccharopine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.485
BU52_05215
Alkane 1-monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.472
BU52_16920
Fatty acid desaturase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.453
Your Current Organism:
Streptomyces toyocaensis
NCBI taxonomy Id: 55952
Other names: S. toyocaensis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.