Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| BU52_07015 | BU52_14220 | BU52_07015 | BU52_14220 | Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. | DNA polymerase III subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.540 |
| BU52_07015 | BU52_14225 | BU52_07015 | BU52_14225 | Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. | RNA polymerase sigma70; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.873 |
| BU52_07015 | BU52_16355 | BU52_07015 | BU52_16355 | Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.999 |
| BU52_07015 | rpoA | BU52_07015 | BU52_06820 | Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.543 |
| BU52_07015 | rpoB | BU52_07015 | BU52_06535 | Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.705 |
| BU52_07015 | rpoC | BU52_07015 | BU52_06540 | Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.721 |
| BU52_09150 | BU52_14225 | BU52_09150 | BU52_14225 | Aerial mycelium formation protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | RNA polymerase sigma70; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.999 |
| BU52_09150 | BU52_21060 | BU52_09150 | BU52_21060 | Aerial mycelium formation protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | XRE family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.756 |
| BU52_09150 | whiA | BU52_09150 | BU52_26550 | Aerial mycelium formation protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | Sporulation protein; Involved in cell division and chromosome segregation. | 0.463 |
| BU52_14220 | BU52_07015 | BU52_14220 | BU52_07015 | DNA polymerase III subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology. | Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.540 |
| BU52_14220 | BU52_14225 | BU52_14220 | BU52_14225 | DNA polymerase III subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology. | RNA polymerase sigma70; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.742 |
| BU52_14220 | BU52_14230 | BU52_14220 | BU52_14230 | DNA polymerase III subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology. | TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.696 |
| BU52_14220 | BU52_16355 | BU52_14220 | BU52_16355 | DNA polymerase III subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology. | Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.742 |
| BU52_14225 | BU52_07015 | BU52_14225 | BU52_07015 | RNA polymerase sigma70; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.873 |
| BU52_14225 | BU52_09150 | BU52_14225 | BU52_09150 | RNA polymerase sigma70; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Aerial mycelium formation protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.999 |
| BU52_14225 | BU52_14220 | BU52_14225 | BU52_14220 | RNA polymerase sigma70; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | DNA polymerase III subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.742 |
| BU52_14225 | BU52_14230 | BU52_14225 | BU52_14230 | RNA polymerase sigma70; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.819 |
| BU52_14225 | BU52_16355 | BU52_14225 | BU52_16355 | RNA polymerase sigma70; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.783 |
| BU52_14225 | BU52_21060 | BU52_14225 | BU52_21060 | RNA polymerase sigma70; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | XRE family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.794 |
| BU52_14225 | rpoA | BU52_14225 | BU52_06820 | RNA polymerase sigma70; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.750 |
page 1 of 3