STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BU52_14860MarR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (156 aa)    
Predicted Functional Partners:
BU52_14855
Thiamine biosynthesis protein ThiJ; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.971
BU52_14850
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
       0.783
BU52_14845
GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.705
BU52_14840
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.686
BU52_01915
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.639
BU52_07745
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.558
BU52_23135
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.510
BU52_05670
Peptidase M20; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.509
BU52_05090
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.503
BU52_21745
PTS alpha-glucoside transporter subunit IIA; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.501
Your Current Organism:
Streptomyces toyocaensis
NCBI taxonomy Id: 55952
Other names: S. toyocaensis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.