BU52_15730 protein (Streptomyces toyocaensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

BU52_15730

GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (478 aa)

Predicted Functional Partners:

BU52_01260

0.709

BU52_22225

0.676

BU52_00905

0.630

BU52_09540

0.630

BU52_15725

0.523

BU52_19670

0.514

ppc

0.500

BU52_20405

0.488

BU52_29120

0.484

BU52_33320

0.480

Your Current Organism:

Streptomyces toyocaensis

NCBI taxonomy Id: 55952
Other names: S. toyocaensis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BU52_00905	BU52_01260	BU52_00905	BU52_01260	Anthranilate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid adenylation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.816
BU52_00905	BU52_09540	BU52_00905	BU52_09540	Anthranilate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Anthranilate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
BU52_00905	BU52_15730	BU52_00905	BU52_15730	Anthranilate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.630
BU52_00905	BU52_19670	BU52_00905	BU52_19670	Anthranilate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Homoserine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.416
BU52_00905	BU52_20405	BU52_00905	BU52_20405	Anthranilate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Prephenate dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.847
BU52_00905	BU52_22225	BU52_00905	BU52_22225	Anthranilate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Mixed polyketide synthase/non-ribosomal peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.930
BU52_00905	BU52_29120	BU52_00905	BU52_29120	Anthranilate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Aspartate oxidase; Catalyzes the oxidation of L-aspartate to iminoaspartate.	0.581
BU52_00905	BU52_33320	BU52_00905	BU52_33320	Anthranilate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.936
BU52_01260	BU52_00905	BU52_01260	BU52_00905	Amino acid adenylation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Anthranilate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.816
BU52_01260	BU52_09540	BU52_01260	BU52_09540	Amino acid adenylation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Anthranilate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.816
BU52_01260	BU52_15730	BU52_01260	BU52_15730	Amino acid adenylation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.709
BU52_01260	BU52_20405	BU52_01260	BU52_20405	Amino acid adenylation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Prephenate dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.510
BU52_01260	BU52_22225	BU52_01260	BU52_22225	Amino acid adenylation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Mixed polyketide synthase/non-ribosomal peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
BU52_01260	BU52_33320	BU52_01260	BU52_33320	Amino acid adenylation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
BU52_09540	BU52_00905	BU52_09540	BU52_00905	Anthranilate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Anthranilate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
BU52_09540	BU52_01260	BU52_09540	BU52_01260	Anthranilate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid adenylation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.816
BU52_09540	BU52_15730	BU52_09540	BU52_15730	Anthranilate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.630
BU52_09540	BU52_19670	BU52_09540	BU52_19670	Anthranilate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Homoserine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.416
BU52_09540	BU52_20405	BU52_09540	BU52_20405	Anthranilate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Prephenate dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.847
BU52_09540	BU52_22225	BU52_09540	BU52_22225	Anthranilate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Mixed polyketide synthase/non-ribosomal peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.930