Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
BU52_16640ArsR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (206 aa)    
Predicted Functional Partners:
BU52_16635
Dienelactone hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.750
BU52_00085
Indole-3-glycerol phosphate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.545
BU52_13280
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.535
BU52_16645
Regulatory protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.509
BU52_16955
Peptidase S51; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase S51 family.
  
     0.494
BU52_01165
Peptidoglycan bridge formation protein FemAB; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.477
BU52_11055
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.477
BU52_13695
Methyltransferase type 11; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.441
BU52_20660
Peptidoglycan bridge formation protein FemAB; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.432
BU52_05130
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.427
Your Current Organism:
Streptomyces toyocaensis
NCBI taxonomy Id: 55952
Other names: S. toyocaensis
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