STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BU52_17940Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (322 aa)    
Predicted Functional Partners:
BU52_17945
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    
0.661
BU52_30165
Asparagine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
  0.643
BU52_12965
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.624
BU52_20010
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.604
valS
valyl-tRNA synthetase; Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a 'posttransfer' editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA- dependent manner; Belongs to the class-I aminoacyl-tRNA synthetase family. ValS type 1 subfamily.
       0.603
BU52_10345
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.590
BU52_08775
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.587
BU52_26590
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.583
BU52_00555
Iron-sulfur protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.581
BU52_05460
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.581
Your Current Organism:
Streptomyces toyocaensis
NCBI taxonomy Id: 55952
Other names: S. toyocaensis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.