STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BU52_18930XRE family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (277 aa)    
Predicted Functional Partners:
BU52_18935
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.797
BU52_18920
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.795
BU52_18925
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.795
recO
DNA recombination protein RecO; Involved in DNA repair and RecF pathway recombination.
  
    0.780
BU52_04630
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.769
BU52_15250
Regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.763
BU52_26395
AbaA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.762
BU52_02205
SAM-dependent methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.759
BU52_09645
RNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.750
BU52_18910
UDP pyrophosphate synthase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.
       0.750
Your Current Organism:
Streptomyces toyocaensis
NCBI taxonomy Id: 55952
Other names: S. toyocaensis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.