STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BU52_23025Lipase; Derived by automated computational analysis using gene prediction method: Protein Homology. (392 aa)    
Predicted Functional Partners:
BU52_23020
TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.673
BU52_06300
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.633
BU52_06835
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.633
BU52_07190
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.633
BU52_26110
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.633
BU52_29900
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.633
BU52_32445
Pectate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.633
BU52_02565
3-hydroxyacyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.562
BU52_31510
3-hydroxyacyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.562
BU52_01935
Cellulose 1,4-beta-cellobiosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.480
Your Current Organism:
Streptomyces toyocaensis
NCBI taxonomy Id: 55952
Other names: S. toyocaensis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.