STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BU52_23275Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (267 aa)    
Predicted Functional Partners:
BU52_23270
NADP-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.787
BU52_23280
Lysine transporter LysE; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.780
BU52_26740
TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.647
dapD
2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Catalyzes the conversion of the cyclic tetrahydrodipicolinate (THDP) into the acyclic N-succinyl-L-2-amino-6-oxopimelate using succinyl-CoA.
 
     0.628
BU52_26735
Ligand-binding protein SH3; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.580
BU52_29695
Ohr subfamily peroxiredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.580
BU52_17985
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.426
BU52_23265
MarR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.400
Your Current Organism:
Streptomyces toyocaensis
NCBI taxonomy Id: 55952
Other names: S. toyocaensis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.