STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BU52_25205Pectin esterase; Derived by automated computational analysis using gene prediction method: Protein Homology. (370 aa)    
Predicted Functional Partners:
BU52_25210
Pectate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.995
BU52_32445
Pectate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.964
BU52_10160
Pectate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.958
BU52_25225
Glycoside hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 43 family.
 
     0.882
BU52_07890
Beta-mannosidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
  
  
  0.772
BU52_25220
Sugar-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.695
BU52_06625
1,4-beta-xylanase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.692
BU52_03610
Glycoside hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 43 family.
 
     0.686
BU52_03605
1,4-beta-xylanase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.668
BU52_25230
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.640
Your Current Organism:
Streptomyces toyocaensis
NCBI taxonomy Id: 55952
Other names: S. toyocaensis
Server load: medium (50%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.