STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KIP53323.1Carbonic anhydrase; Derived by automated computational analysis using gene prediction method: Protein Homology. (226 aa)    
Predicted Functional Partners:
KIP53466.1
Carbonic anhydrase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.952
KIP52708.1
MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.931
KIP53324.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.847
xseB
Exodeoxyribonuclease VII small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family.
 
     0.827
aspA
Aspartate ammonia-lyase; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily.
       0.749
apt
Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.
   
    0.718
KIP53002.1
Sulfate permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.687
KIP51759.1
Sulfate permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.657
KIP52794.1
Adenine glycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.452
KIP53585.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
  0.441
Your Current Organism:
Leucobacter komagatae
NCBI taxonomy Id: 55969
Other names: CCUG 49676, CIP 105084, DSM 8803, IFO 15245, JCM 9414, L. komagatae, NBRC 15245, VKM Ac-2073
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.