STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KIP52691.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (430 aa)    
Predicted Functional Partners:
KIP53871.1
Globin; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.842
KIP53131.1
Amino acid permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.765
KIP51582.1
Putrescine importer PuuP; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.721
KIP51674.1
GABA permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.667
KIP53138.1
Amino acid permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.659
KIP51396.1
Amino acid permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.496
truB
tRNA pseudouridine synthase B; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily.
    
   0.402
Your Current Organism:
Leucobacter komagatae
NCBI taxonomy Id: 55969
Other names: CCUG 49676, CIP 105084, DSM 8803, IFO 15245, JCM 9414, L. komagatae, NBRC 15245, VKM Ac-2073
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.