STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A177D3N3Cysteine proteinase. (555 aa)    
Predicted Functional Partners:
A0A177DP09
P-loop containing nucleoside triphosphate hydrolase protein.
   
 0.957
A0A177E1V6
Uncharacterized protein.
    
 0.950
A0A177D232
DUF1777-domain-containing protein.
   
 0.937
AA0117_g9588
Pre-mRNA-processing-splicing factor 8.
   
 0.899
A0A177D2H6
Proteasome subunit beta.
 
    
 0.892
AA0117_g7725
Pre-mRNA-splicing ATP-dependent RNA helicase PRP28; Belongs to the DEAD box helicase family.
   
 0.885
A0A177D6X2
Cell cycle control protein-like protein cwf17.
   
 0.875
A0A177D429
U4/U6 small nuclear ribonucleo protein Prp31.
    
 0.863
AA0117_g5003
PRP3-domain-containing protein.
   
 0.848
AA0117_g11435
Pre-mRNA-splicing factor.
    
 0.803
Your Current Organism:
Alternaria alternata
NCBI taxonomy Id: 5599
Other names: A. alternata, ATCC 66981 [[Alternaria tenuis]], Alternaria sp. AltIEIHBT, Alternaria sp. Ao34, Alternaria sp. Ao41, Alternaria sp. JZ017, Alternaria sp. M2-2, Alternaria sp. XJU-1, Alternaria tenuis, CBS 916.96 [[Alternaria tenuis]], EGS 34-016 [[Alternaria tenuis]], IMI 254138 [[Alternaria tenuis]], Torula alternata
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.