STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A177D5D1Uncharacterized protein. (714 aa)    
Predicted Functional Partners:
A0A177D8G9
PX domain-containing protein.
      
0.634
A0A177DXC4
Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.
   
 
 0.512
AA0117_g12070
Vacuolar protein sorting-associated protein 26B-A.
    
 
 0.510
AA0117_g10423
Vacuolar protein sorting-associated protein 29; Belongs to the VPS29 family.
    
 
 0.510
A0A177DBH4
PXA domain-containing protein.
      
 0.481
A0A177DS63
Uncharacterized protein.
      
 0.481
A0A177E146
TRP-domain-containing protein.
    
 
 0.460
AA0117_g6083
Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.
   
 0.415
Your Current Organism:
Alternaria alternata
NCBI taxonomy Id: 5599
Other names: A. alternata, ATCC 66981 [[Alternaria tenuis]], Alternaria sp. AltIEIHBT, Alternaria sp. Ao34, Alternaria sp. Ao41, Alternaria sp. JZ017, Alternaria sp. M2-2, Alternaria sp. XJU-1, Alternaria tenuis, CBS 916.96 [[Alternaria tenuis]], EGS 34-016 [[Alternaria tenuis]], IMI 254138 [[Alternaria tenuis]], Torula alternata
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