STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A177D6G9NAF1-domain-containing protein. (864 aa)    
Predicted Functional Partners:
AA0117_g4069
Centromere/microtubule-binding protein.
   
 
 0.995
AA0117_g3834
L30e-like protein.
   
 
 0.949
A0A177DSX7
H/ACA ribonucleo protein-like protein complex subunit 3.
   
 
 0.834
A0A177DVA1
tRNA pseudouridine synthase B.
   
 
 0.779
AA0117_g459
tRNA pseudouridine synthase B.
   
 
 0.779
A0A177D8H6
RNA-binding domain-containing protein.
   
   0.771
AA0117_g7302
Uncharacterized protein.
   
 
 0.749
A0A177DKZ1
Uncharacterized protein.
   
 
 0.749
A0A177DBR4
Uncharacterized protein.
   
 
 0.686
A0A177DHD7
Ribosomal L1 domain-containing 1.
   
  
 0.633
Your Current Organism:
Alternaria alternata
NCBI taxonomy Id: 5599
Other names: A. alternata, ATCC 66981 [[Alternaria tenuis]], Alternaria sp. AltIEIHBT, Alternaria sp. Ao34, Alternaria sp. Ao41, Alternaria sp. JZ017, Alternaria sp. M2-2, Alternaria sp. XJU-1, Alternaria tenuis, CBS 916.96 [[Alternaria tenuis]], EGS 34-016 [[Alternaria tenuis]], IMI 254138 [[Alternaria tenuis]], Torula alternata
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.