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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A177DEV9PHD domain-containing protein. (698 aa)    
Predicted Functional Partners:
A0A177DTW7
WD40 repeat-like protein.
    
 0.998
A0A177DW56
WD40 repeat-like protein.
   
 0.998
A0A177E1N9
Uncharacterized protein.
   
 0.997
A0A177DTK6
Histone demethylase JARID1D.
    
 0.952
AA0117_g844
PHD-type domain-containing protein.
   
 0.936
AA0117_g4735
ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.
    
 0.818
AA0117_g1164
Histone H2B; Belongs to the histone H2B family.
    
 0.712
AA0117_g3873
Enhancer of polycomb-like protein.
     
 0.639
AA0117_g3983
Histone H2A; Belongs to the histone H2A family.
    
 0.610
A0A177DF74
Hist_deacetyl domain-containing protein.
   
 0.573
Your Current Organism:
Alternaria alternata
NCBI taxonomy Id: 5599
Other names: A. alternata, ATCC 66981 [[Alternaria tenuis]], Alternaria sp. AltIEIHBT, Alternaria sp. Ao34, Alternaria sp. Ao41, Alternaria sp. JZ017, Alternaria sp. M2-2, Alternaria sp. XJU-1, Alternaria tenuis, CBS 916.96 [[Alternaria tenuis]], EGS 34-016 [[Alternaria tenuis]], IMI 254138 [[Alternaria tenuis]], Torula alternata
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