STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A177DI55zf-C3H1 domain-containing protein. (1011 aa)    
Predicted Functional Partners:
AA0117_g5475
ATP-dependent RNA helicase DOB1.
    
 
 0.945
A0A177DNE5
Uncharacterized protein.
   
 
 0.816
A0A177DFF5
Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's.
   
 
 0.801
A0A177DWA6
Uncharacterized protein.
   
 
 0.801
A0A177DIY5
Uncharacterized protein.
   
 
 0.752
A0A177DA98
Antiviral helicase.
    
 
 0.689
AA0117_g5541
RNA-binding domain-containing protein.
    
 
 0.674
A0A177DTE5
P-loop containing nucleoside triphosphate hydrolase protein.
    
 
 0.652
A0A177DYJ3
ARM repeat-containing protein.
    
 
 0.652
A0A177DZB6
HRDC domain-containing protein.
   
 
 0.591
Your Current Organism:
Alternaria alternata
NCBI taxonomy Id: 5599
Other names: A. alternata, ATCC 66981 [[Alternaria tenuis]], Alternaria sp. AltIEIHBT, Alternaria sp. Ao34, Alternaria sp. Ao41, Alternaria sp. JZ017, Alternaria sp. M2-2, Alternaria sp. XJU-1, Alternaria tenuis, CBS 916.96 [[Alternaria tenuis]], EGS 34-016 [[Alternaria tenuis]], IMI 254138 [[Alternaria tenuis]], Torula alternata
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.