STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A177DM442-nitropropane dioxygenase. (349 aa)    
Predicted Functional Partners:
A0A177DZM8
N-acetyltransferase domain-containing protein.
   
 
 0.689
A0A177DHN1
tRNA pseudouridine synthase D.
    
 
 0.519
A0A177DCK4
Uncharacterized protein.
   
    0.492
A0A177DXR4
Exodeoxyribonuclease 1.
  
  
 0.491
A0A177DEU0
tRNA modification GTPase mss1 mitochondrial.
   
 
 0.472
A0A177DEA5
Mitochondrial 54S ribosomal protein YmL9.
   
 
 0.466
AA0117_g822
Mitochondrial 54S ribosomal protein YmL23.
  
 
 0.438
A0A177DLG2
EngB-type G domain-containing protein.
   
 
 0.435
AA0117_g9761
Ribosomal protein L15.
   
   0.431
AA0117_g5608
Ribosomal protein L17; Belongs to the bacterial ribosomal protein bL17 family.
  
   0.425
Your Current Organism:
Alternaria alternata
NCBI taxonomy Id: 5599
Other names: A. alternata, ATCC 66981 [[Alternaria tenuis]], Alternaria sp. AltIEIHBT, Alternaria sp. Ao34, Alternaria sp. Ao41, Alternaria sp. JZ017, Alternaria sp. M2-2, Alternaria sp. XJU-1, Alternaria tenuis, CBS 916.96 [[Alternaria tenuis]], EGS 34-016 [[Alternaria tenuis]], IMI 254138 [[Alternaria tenuis]], Torula alternata
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