STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A177DPJ3Helicase swr1. (1691 aa)    
Predicted Functional Partners:
AA0117_g8086
RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes.
    
 0.996
AA0117_g3983
Histone H2A; Belongs to the histone H2A family.
    
 0.996
AA0117_g9629
RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes.
    
 0.996
AA0117_g503
Actin/actin-like protein; Belongs to the actin family.
    
 0.991
A0A177DVZ8
Actin-domain-containing protein; Belongs to the actin family.
    
 
 0.990
A0A177DXH7
HIT-type domain-containing protein.
    
 
 0.988
A0A177DEM8
SANT_DAMP1_like domain-containing protein.
   
 0.979
A0A177E5I2
YL1-domain-containing protein.
    
 0.972
A0A177DIR1
Yeats-domain-containing protein.
    
 0.960
AA0117_g4578
Actin, gamma.
    
 0.954
Your Current Organism:
Alternaria alternata
NCBI taxonomy Id: 5599
Other names: A. alternata, ATCC 66981 [[Alternaria tenuis]], Alternaria sp. AltIEIHBT, Alternaria sp. Ao34, Alternaria sp. Ao41, Alternaria sp. JZ017, Alternaria sp. M2-2, Alternaria sp. XJU-1, Alternaria tenuis, CBS 916.96 [[Alternaria tenuis]], EGS 34-016 [[Alternaria tenuis]], IMI 254138 [[Alternaria tenuis]], Torula alternata
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