STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AA0117_g7155Splicing factor subunit; Belongs to the SF3B5 family. (84 aa)    
Predicted Functional Partners:
AA0117_g8260
RNA-binding domain-containing protein.
   
 0.999
A0A177D9Y6
Splicing factor 3B subunit 1.
    
 0.999
AA0117_g4784
DUF382-domain-containing protein.
    
 0.999
A0A177DFL2
CPSF_A domain-containing protein.
   
 0.999
AA0117_g4171
RNA-binding domain-containing protein.
   
 0.999
AA0117_g11153
PHF5-like protein.
   
 0.999
AA0117_g162
Matrin-type domain-containing protein.
   
 0.998
A0A177DSI5
P-loop containing nucleoside triphosphate hydrolase protein.
    
 0.997
A0A177DUH5
Matrin-type domain-containing protein.
   
 0.995
AA0117_g10812
U2 small nuclear ribonucleo protein A.
   
 0.994
Your Current Organism:
Alternaria alternata
NCBI taxonomy Id: 5599
Other names: A. alternata, ATCC 66981 [[Alternaria tenuis]], Alternaria sp. AltIEIHBT, Alternaria sp. Ao34, Alternaria sp. Ao41, Alternaria sp. JZ017, Alternaria sp. M2-2, Alternaria sp. XJU-1, Alternaria tenuis, CBS 916.96 [[Alternaria tenuis]], EGS 34-016 [[Alternaria tenuis]], IMI 254138 [[Alternaria tenuis]], Torula alternata
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.