STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AA0117_g856Nuclear localization protein. (489 aa)    
Predicted Functional Partners:
AA0117_g5849
Uncharacterized protein.
    
 
 0.960
A0A177DYI3
Uncharacterized protein; Belongs to the actin family.
   
 0.950
A0A177DW55
Bromodomain-containing protein.
  
 
 
 0.930
A0A177DNC8
SWIB domain-containing protein.
   
 
 0.919
AA0117_g10287
SWIRM-domain-containing protein.
    
 
 0.906
AA0117_g4136
Chromatin structure-remodeling complex subunit.
   
 
 0.885
AA0117_g8359
SNF5-domain-containing protein.
    
 
 0.818
AA0117_g758
ARID domain-containing protein.
    
 
 0.736
A0A177DMS6
Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.
    
 0.650
AA0117_g1163
Histone H2A; Belongs to the histone H2A family.
    
 0.625
Your Current Organism:
Alternaria alternata
NCBI taxonomy Id: 5599
Other names: A. alternata, ATCC 66981 [[Alternaria tenuis]], Alternaria sp. AltIEIHBT, Alternaria sp. Ao34, Alternaria sp. Ao41, Alternaria sp. JZ017, Alternaria sp. M2-2, Alternaria sp. XJU-1, Alternaria tenuis, CBS 916.96 [[Alternaria tenuis]], EGS 34-016 [[Alternaria tenuis]], IMI 254138 [[Alternaria tenuis]], Torula alternata
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.