STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AA0117_g1206ADP-ribosylation factor-binding protein. (648 aa)    
Predicted Functional Partners:
A0A177DE08
ARF/SAR superfamily; Belongs to the small GTPase superfamily. Arf family.
    
 0.915
A0A177DBR6
ENTH-domain-containing protein.
    
 
 0.761
A0A177D2R5
Ubiquitin-domain-containing protein.
   
   0.711
AA0117_g5843
Polyubiquitin.
   
   0.711
AA0117_g5152
Ubiquitin-40S ribosomal protein S31 fusion protein.
    
   0.656
A0A177DT94
BZIP domain-containing protein.
    
   0.656
AA0117_g6083
Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.
    
 
 0.649
A0A177DII4
RRN7-type domain-containing protein.
    
   0.575
AA0117_g1086
AN1-type zinc finger protein.
    
   0.575
AA0117_g5388
E3 ubiquitin-protein ligase.
   
 
 0.524
Your Current Organism:
Alternaria alternata
NCBI taxonomy Id: 5599
Other names: A. alternata, ATCC 66981 [[Alternaria tenuis]], Alternaria sp. AltIEIHBT, Alternaria sp. Ao34, Alternaria sp. Ao41, Alternaria sp. JZ017, Alternaria sp. M2-2, Alternaria sp. XJU-1, Alternaria tenuis, CBS 916.96 [[Alternaria tenuis]], EGS 34-016 [[Alternaria tenuis]], IMI 254138 [[Alternaria tenuis]], Torula alternata
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