STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A177E193Phytoene dehydrogenase. (587 aa)    
Predicted Functional Partners:
A0A177E184
Terpenoid synthase.
 
  
  0.991
AA0117_g12484
Farnesyl-diphosphate farnesyltransferase.
  
 
 0.969
A0A177DUM5
Uncharacterized protein.
  
 
 0.951
A0A177DNA3
2-oxoisovalerate dehydrogenase subunit alpha; The branched-chain alpha-keto dehydrogenase complex catalyzes the overall conversion of alpha-keto acids to acyl-CoA and CO(2). It contains multiple copies of three enzymatic components: branched-chain alpha-keto acid decarboxylase (E1), lipoamide acyltransferase (E2) and lipoamide dehydrogenase (E3).
    
 0.705
A0A177DG53
Glycerol-3-phosphate dehydrogenase; Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family.
     
 0.703
AA0117_g10889
Isopentenyldiphosphate isomerase.
  
  
 0.697
AA0117_g2646
Farnesyl pyrophosphate synthetase; Belongs to the FPP/GGPP synthase family.
  
  
 0.679
A0A177E1A2
Tryptophan synthase.
     
 0.666
AA0117_g5576
Diphosphomevalonate decarboxylase; Belongs to the diphosphomevalonate decarboxylase family.
     
 0.661
AA0117_g10962
Delta-aminolevulinic acid dehydratase; Belongs to the ALAD family.
     
 0.658
Your Current Organism:
Alternaria alternata
NCBI taxonomy Id: 5599
Other names: A. alternata, ATCC 66981 [[Alternaria tenuis]], Alternaria sp. AltIEIHBT, Alternaria sp. Ao34, Alternaria sp. Ao41, Alternaria sp. JZ017, Alternaria sp. M2-2, Alternaria sp. XJU-1, Alternaria tenuis, CBS 916.96 [[Alternaria tenuis]], EGS 34-016 [[Alternaria tenuis]], IMI 254138 [[Alternaria tenuis]], Torula alternata
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