STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AA0117_g1874Exosome complex exonuclease RRP40. (241 aa)    
Predicted Functional Partners:
AA0117_g7101
ECR1_N domain-containing protein.
    
 0.820
AA0117_g3682
RNase_PH domain-containing protein.
   
 0.780
AA0117_g7248
Uncharacterized protein.
     
 0.767
AA0117_g159
RNB-domain-containing protein; Belongs to the RNR ribonuclease family.
   
 0.720
A0A177DBQ9
Exosome complex exonuclease RRP41.
    
 0.665
AA0117_g11893
Exosome complex component.
   
 
 0.637
A0A177DQI5
Cell wall biogenesis protein phosphatase Ssd1.
   
 0.418
A0A177DQP0
RNase_PH domain-containing protein.
    
 0.415
Your Current Organism:
Alternaria alternata
NCBI taxonomy Id: 5599
Other names: A. alternata, ATCC 66981 [[Alternaria tenuis]], Alternaria sp. AltIEIHBT, Alternaria sp. Ao34, Alternaria sp. Ao41, Alternaria sp. JZ017, Alternaria sp. M2-2, Alternaria sp. XJU-1, Alternaria tenuis, CBS 916.96 [[Alternaria tenuis]], EGS 34-016 [[Alternaria tenuis]], IMI 254138 [[Alternaria tenuis]], Torula alternata
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.