PV04_09699 protein (Phialophora americana) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

PV04_09699

RING-type domain-containing protein. (749 aa)

Predicted Functional Partners:

PV04_02625

0.982

PV04_10062

0.981

PV04_07375

0.843

PV04_04784

0.834

PV04_07318

0.769

PV04_07449

0.744

PV04_06406

0.717

PV04_02509

0.703

PV04_10959

0.666

PV04_01709

0.647

Your Current Organism:

Phialophora americana

NCBI taxonomy Id: 5601
Other names: Cadophora americana, Capronia semi-immersa, Capronia semiimmersa, Dictyotrichiella semi-immersa, P. americana

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PV04_01709	PV04_02625	A0A0D2G493	A0A0D2FV21	BHLH domain-containing protein.	UBX domain-containing protein.	0.673
PV04_01709	PV04_09699	A0A0D2G493	A0A0D2FD24	BHLH domain-containing protein.	RING-type domain-containing protein.	0.647
PV04_01709	PV04_10062	A0A0D2G493	A0A0D2DLC8	BHLH domain-containing protein.	Uncharacterized protein.	0.737
PV04_02509	PV04_06406	A0A0D2E7B9	A0A0D2G540	B30.2/SPRY domain-containing protein.	E3 ubiquitin-protein ligase.	0.870
PV04_02509	PV04_09699	A0A0D2E7B9	A0A0D2FD24	B30.2/SPRY domain-containing protein.	RING-type domain-containing protein.	0.703
PV04_02625	PV04_01709	A0A0D2FV21	A0A0D2G493	UBX domain-containing protein.	BHLH domain-containing protein.	0.673
PV04_02625	PV04_04784	A0A0D2FV21	A0A0D2GA68	UBX domain-containing protein.	Uncharacterized protein; Belongs to the AAA ATPase family.	0.825
PV04_02625	PV04_07318	A0A0D2FV21	A0A0D2FYT4	UBX domain-containing protein.	Uncharacterized protein.	0.762
PV04_02625	PV04_09699	A0A0D2FV21	A0A0D2FD24	UBX domain-containing protein.	RING-type domain-containing protein.	0.982
PV04_02625	PV04_10062	A0A0D2FV21	A0A0D2DLC8	UBX domain-containing protein.	Uncharacterized protein.	0.976
PV04_04784	PV04_02625	A0A0D2GA68	A0A0D2FV21	Uncharacterized protein; Belongs to the AAA ATPase family.	UBX domain-containing protein.	0.825
PV04_04784	PV04_06406	A0A0D2GA68	A0A0D2G540	Uncharacterized protein; Belongs to the AAA ATPase family.	E3 ubiquitin-protein ligase.	0.590
PV04_04784	PV04_09699	A0A0D2GA68	A0A0D2FD24	Uncharacterized protein; Belongs to the AAA ATPase family.	RING-type domain-containing protein.	0.834
PV04_04784	PV04_10959	A0A0D2GA68	A0A0D2FS03	Uncharacterized protein; Belongs to the AAA ATPase family.	Vacuolar protein sorting-associated protein 27; Component of the ESCRT-0 complex which is the sorting receptor for ubiquitinated cargo proteins at the multivesicular body (MVB) and recruits ESCRT-I to the MVB outer membrane.	0.890
PV04_06406	PV04_02509	A0A0D2G540	A0A0D2E7B9	E3 ubiquitin-protein ligase.	B30.2/SPRY domain-containing protein.	0.870
PV04_06406	PV04_04784	A0A0D2G540	A0A0D2GA68	E3 ubiquitin-protein ligase.	Uncharacterized protein; Belongs to the AAA ATPase family.	0.590
PV04_06406	PV04_07375	A0A0D2G540	A0A0D2CIP8	E3 ubiquitin-protein ligase.	Ubiquitin-conjugating enzyme E2-16 kDa; Belongs to the ubiquitin-conjugating enzyme family.	0.970
PV04_06406	PV04_09699	A0A0D2G540	A0A0D2FD24	E3 ubiquitin-protein ligase.	RING-type domain-containing protein.	0.717
PV04_06406	PV04_10959	A0A0D2G540	A0A0D2FS03	E3 ubiquitin-protein ligase.	Vacuolar protein sorting-associated protein 27; Component of the ESCRT-0 complex which is the sorting receptor for ubiquitinated cargo proteins at the multivesicular body (MVB) and recruits ESCRT-I to the MVB outer membrane.	0.891
PV04_07318	PV04_02625	A0A0D2FYT4	A0A0D2FV21	Uncharacterized protein.	UBX domain-containing protein.	0.762