STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PV04_05950Biotin-[acetyl-CoA-carboxylase] ligase. (702 aa)    
Predicted Functional Partners:
PV04_01901
Uncharacterized protein.
  
 0.962
PV04_00136
Pyruvate carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second.
  
 
 0.948
PV04_00119
Biotin synthase.
  
 
 0.927
PV04_09343
Pantoate-beta-alanine ligase.
  
 
 0.860
PV04_02978
Uncharacterized protein.
    
 0.806
PV04_00170
Uncharacterized protein.
    
 0.806
PV04_06473
Flavoprotein domain-containing protein.
  
 
 0.798
PV04_07534
Allophanate hydrolase.
    
 0.747
PV04_07182
Urea carboxylase.
    
 0.747
PV04_08191
Urea carboxylase.
    
 0.747
Your Current Organism:
Phialophora americana
NCBI taxonomy Id: 5601
Other names: Cadophora americana, Capronia semi-immersa, Capronia semiimmersa, Dictyotrichiella semi-immersa, P. americana
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