STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PV04_08473PSP domain-containing protein. (581 aa)    
Predicted Functional Partners:
PV04_04769
SF3b1 domain-containing protein.
   
 0.998
PV04_02650
Pre-mRNA-splicing factor rse1.
   
 0.997
PV04_04844
Splicing factor subunit; Belongs to the SF3B5 family.
    
 0.997
PV04_03327
Uncharacterized protein.
   
 0.997
PV04_01510
PHD finger-like domain-containing protein 5B.
    
 0.997
PV04_10373
Matrin-type domain-containing protein.
   
 0.995
PV04_06425
Matrin-type domain-containing protein.
   
 0.995
PV04_08846
Uncharacterized protein.
   
 0.994
PV04_00942
Uncharacterized protein.
   
 0.993
PV04_01625
Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.
    
 0.993
Your Current Organism:
Phialophora americana
NCBI taxonomy Id: 5601
Other names: Cadophora americana, Capronia semi-immersa, Capronia semiimmersa, Dictyotrichiella semi-immersa, P. americana
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