Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ORB08945.1DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (111 aa)    
Predicted Functional Partners:
ORB08749.1
acetyl-CoA acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.936
ORB05427.1
beta-hydroxyacyl-ACP dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.896
ORB02855.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.843
ORB07280.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.841
ORB05655.1
Acyl dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.837
ORB05692.1
Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
   0.820
ORB06764.1
Acyl dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.816
ORB05836.1
Acyl dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.811
ORB05654.1
Lipid-transfer protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.780
ORB07104.1
DitF protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.776
Your Current Organism:
Mycobacterium mantenii
NCBI taxonomy Id: 560555
Other names: CIP 109863, DSM 45255, JCM 18113, M. mantenii, Mycobacterium mantenii van Ingen et al. 2009, Mycobacterium sp. E152, Mycobacterium sp. E2660, Mycobacterium sp. E3078, Mycobacterium sp. E3121, Mycobacterium sp. NLA000401474, Mycobacterium sp. NLA000800224, strain NLA000401474
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