STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SME88208.1Hypothetical protein. (378 aa)    
Predicted Functional Partners:
SME88201.1
Acetylornithine deacetylase.
 
     0.759
SMF73809.1
Putative tricarboxylic transport membrane protein.
 
    0.637
SMF13987.1
Putative tricarboxylic transport membrane protein.
 
    0.555
SMF73801.1
Putative tricarboxylic transport membrane protein.
 
    0.485
SME88197.1
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
       0.465
SMF13978.1
Tripartite-type tricarboxylate transporter, receptor component TctC.
 
    0.455
SMF73819.1
Putative tricarboxylic transport membrane protein.
 
    0.453
SME90105.1
Tripartite-type tricarboxylate transporter, receptor component TctC.
 
    0.437
SMF13996.1
TctA family transporter.
 
    0.410
Your Current Organism:
Tistlia consotensis
NCBI taxonomy Id: 560819
Other names: T. consotensis USBA 355, Tistlia consotensis USBA 355, alpha proteobacterium USBA 355
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.