STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMF03713.1Alginate export. (463 aa)    
Predicted Functional Partners:
SMF03774.1
Hypothetical protein.
 
     0.936
SMF72578.1
Cytochrome c554 and c-prime.
  
 
 0.925
SMF03781.1
Nicotinamidase-related amidase.
 
     0.892
SMF70573.1
Periplasmic chaperone for outer membrane proteins Skp.
    
 
 0.863
SMF03720.1
Putative oxidoreductase.
 
     0.831
SMF03766.1
Predicted arabinose efflux permease, MFS family.
 
     0.826
SMF03727.1
XapX domain-containing protein.
       0.777
SMF03756.1
XapX domain-containing protein.
       0.777
SMF03788.1
Non-heme chloroperoxidase.
 
     0.668
rpsU
SSU ribosomal protein S21P; Belongs to the bacterial ribosomal protein bS21 family.
  
 
 
 0.650
Your Current Organism:
Tistlia consotensis
NCBI taxonomy Id: 560819
Other names: T. consotensis USBA 355, Tistlia consotensis USBA 355, alpha proteobacterium USBA 355
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.