STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMF01763.1Protocatechuate 3,4-dioxygenase beta subunit. (214 aa)    
Predicted Functional Partners:
SMF77272.1
Protocatechuate 3,4-dioxygenase, alpha subunit.
  
  
  0.846
SMF85293.1
P-hydroxybenzoate 3-monooxygenase.
 
  
 0.793
SMF12147.1
Catechol 1,2-dioxygenase.
  
   
 0.684
SMF51941.1
4-hydroxyphenylpyruvate dioxygenase.
 
  
 0.646
SMF77260.1
4-carboxymuconolactone decarboxylase.
 
 
 0.640
SMF77266.1
Protocatechuate 3,4-dioxygenase, beta subunit.
  
  
 
0.600
SMF36427.1
4-carboxymuconolactone decarboxylase.
 
 
 0.550
SMF77254.1
3-oxoadipate enol-lactonase.
  
  
  0.511
SMF07901.1
3-carboxy-cis,cis-muconate cycloisomerase.
 
 
 0.507
SMF65540.1
4-carboxymuconolactone decarboxylase.
 
 
 0.501
Your Current Organism:
Tistlia consotensis
NCBI taxonomy Id: 560819
Other names: T. consotensis USBA 355, Tistlia consotensis USBA 355, alpha proteobacterium USBA 355
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