SMF05300.1 protein (Tistlia consotensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SMF05300.1

Methyltransferase domain-containing protein. (236 aa)

Predicted Functional Partners:

SME90667.1

0.927

SMF03952.1

0.926

SME90659.1

0.923

SMF69237.1

0.862

SMF69245.1

0.857

SMF03967.1

0.824

SMF58648.1

0.758

gcvP

0.634

SMF03908.1

0.584

SMF04030.1

0.536

Your Current Organism:

Tistlia consotensis

NCBI taxonomy Id: 560819
Other names: T. consotensis USBA 355, Tistlia consotensis USBA 355, alpha proteobacterium USBA 355

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SME90659.1	SME90667.1	SAMN05428998_101331	SAMN05428998_101332	Amino acid adenylation domain-containing protein.	Non-ribosomal peptide synthase domain TIGR01720/amino acid adenylation domain-containing protein.	0.999
SME90659.1	SMF03908.1	SAMN05428998_101331	SAMN05428998_103171	Amino acid adenylation domain-containing protein.	Non-ribosomal peptide synthase domain TIGR01720/amino acid adenylation domain-containing protein.	0.999
SME90659.1	SMF03952.1	SAMN05428998_101331	SAMN05428998_103172	Amino acid adenylation domain-containing protein.	Amino acid adenylation domain-containing protein.	0.999
SME90659.1	SMF03967.1	SAMN05428998_101331	SAMN05428998_103173	Amino acid adenylation domain-containing protein.	Amino acid adenylation domain-containing protein.	0.999
SME90659.1	SMF04030.1	SAMN05428998_101331	SAMN05428998_103178	Amino acid adenylation domain-containing protein.	Polyketide-type polyunsaturated fatty acid synthase PfaA.	0.999
SME90659.1	SMF05300.1	SAMN05428998_101331	SAMN05428998_103261	Amino acid adenylation domain-containing protein.	Methyltransferase domain-containing protein.	0.923
SME90659.1	SMF58648.1	SAMN05428998_101331	SAMN05428998_12234	Amino acid adenylation domain-containing protein.	Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II.	0.999
SME90659.1	SMF69237.1	SAMN05428998_101331	SAMN05428998_12847	Amino acid adenylation domain-containing protein.	Amino acid adenylation domain-containing protein.	0.999
SME90659.1	SMF69245.1	SAMN05428998_101331	SAMN05428998_12848	Amino acid adenylation domain-containing protein.	Amino acid adenylation domain-containing protein.	0.999
SME90659.1	gcvP	SAMN05428998_101331	SAMN05428998_101681	Amino acid adenylation domain-containing protein.	Glycine dehydrogenase (decarboxylating); The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.	0.537
SME90667.1	SME90659.1	SAMN05428998_101332	SAMN05428998_101331	Non-ribosomal peptide synthase domain TIGR01720/amino acid adenylation domain-containing protein.	Amino acid adenylation domain-containing protein.	0.999
SME90667.1	SMF03908.1	SAMN05428998_101332	SAMN05428998_103171	Non-ribosomal peptide synthase domain TIGR01720/amino acid adenylation domain-containing protein.	Non-ribosomal peptide synthase domain TIGR01720/amino acid adenylation domain-containing protein.	0.999
SME90667.1	SMF03952.1	SAMN05428998_101332	SAMN05428998_103172	Non-ribosomal peptide synthase domain TIGR01720/amino acid adenylation domain-containing protein.	Amino acid adenylation domain-containing protein.	0.999
SME90667.1	SMF03967.1	SAMN05428998_101332	SAMN05428998_103173	Non-ribosomal peptide synthase domain TIGR01720/amino acid adenylation domain-containing protein.	Amino acid adenylation domain-containing protein.	0.999
SME90667.1	SMF04030.1	SAMN05428998_101332	SAMN05428998_103178	Non-ribosomal peptide synthase domain TIGR01720/amino acid adenylation domain-containing protein.	Polyketide-type polyunsaturated fatty acid synthase PfaA.	0.999
SME90667.1	SMF05300.1	SAMN05428998_101332	SAMN05428998_103261	Non-ribosomal peptide synthase domain TIGR01720/amino acid adenylation domain-containing protein.	Methyltransferase domain-containing protein.	0.927
SME90667.1	SMF58648.1	SAMN05428998_101332	SAMN05428998_12234	Non-ribosomal peptide synthase domain TIGR01720/amino acid adenylation domain-containing protein.	Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II.	0.999
SME90667.1	SMF69237.1	SAMN05428998_101332	SAMN05428998_12847	Non-ribosomal peptide synthase domain TIGR01720/amino acid adenylation domain-containing protein.	Amino acid adenylation domain-containing protein.	0.999
SME90667.1	SMF69245.1	SAMN05428998_101332	SAMN05428998_12848	Non-ribosomal peptide synthase domain TIGR01720/amino acid adenylation domain-containing protein.	Amino acid adenylation domain-containing protein.	0.999
SME90667.1	gcvP	SAMN05428998_101332	SAMN05428998_101681	Non-ribosomal peptide synthase domain TIGR01720/amino acid adenylation domain-containing protein.	Glycine dehydrogenase (decarboxylating); The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.	0.537