STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMF08512.1Uncharacterized membrane protein. (179 aa)    
Predicted Functional Partners:
SME94664.1
Uncharacterized conserved protein, DUF983 family.
  
     0.757
SMF25201.1
Predicted secreted protein.
  
     0.729
nth
DNA-(apurinic or apyrimidinic site) lyase; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate.
       0.668
SMF58753.1
Uncharacterized conserved protein, DUF983 family.
  
     0.662
SMF13478.1
Uncharacterized conserved protein, DUF983 family.
  
     0.656
SMF62950.1
Histidine kinase.
  
     0.644
SMF20413.1
Molybdopterin molybdochelatase /molybdenum cofactor cytidylyltransferase.
  
     0.581
SMF83529.1
Protein of unknown function.
  
     0.575
SME91597.1
TIGR02302 family protein.
  
     0.538
SMF33079.1
Regulator of CtrA degradation.
  
     0.514
Your Current Organism:
Tistlia consotensis
NCBI taxonomy Id: 560819
Other names: T. consotensis USBA 355, Tistlia consotensis USBA 355, alpha proteobacterium USBA 355
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.