STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMF06817.1Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase. (466 aa)    
Predicted Functional Partners:
SMF29762.1
Dihydropyrimidine dehydrogenase (NAD+) subunit PreA.
  
 0.738
SMF64230.1
Peptide/nickel transport system substrate-binding protein.
 
     0.730
argC
N-acetyl-gamma-glutamyl-phosphate reductase; Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde. Belongs to the NAGSA dehydrogenase family. Type 2 subfamily.
 
 0.681
SMF11475.1
FAD/FMN-containing dehydrogenase.
 
 
  0.599
SMF11455.1
FAD binding domain-containing protein.
 
 
  0.595
SMF16252.1
GNAT-family acetyltransferase TIGR03103.
    
 0.559
argG
Argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 1 subfamily.
  
 0.555
SMF72415.1
FAD/FMN-containing dehydrogenase.
   
  0.534
SMF06793.1
Methyl-accepting chemotaxis protein.
       0.508
SMF06805.1
Hypothetical protein.
       0.508
Your Current Organism:
Tistlia consotensis
NCBI taxonomy Id: 560819
Other names: T. consotensis USBA 355, Tistlia consotensis USBA 355, alpha proteobacterium USBA 355
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