STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMF13943.1Phytoene dehydrogenase-related protein. (540 aa)    
Predicted Functional Partners:
SME93397.1
Farnesyl-diphosphate farnesyltransferase.
  
 
 0.907
SMF79091.1
Phytoene synthase.
  
 
 0.885
SMF13938.1
Phytoene dehydrogenase-related protein.
 
    
0.818
SME93418.1
Squalene synthase HpnC.
  
 
 0.762
SMF13953.1
Aminomethyltransferase; Belongs to the GcvT family.
       0.732
SMF58648.1
Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II.
    
 0.686
SMF13924.1
Transcriptional regulator, TetR family.
 
  
  0.627
SME93373.1
Squalene-associated FAD-dependent desaturase.
    
 0.586
betB
Betaine aldehyde dehydrogenase; Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the reversible oxidation of betaine aldehyde to the corresponding acid.
  
 
 0.562
betI
Transcriptional regulator, TetR family; Repressor involved in choline regulation of the bet genes.
  
 
 0.562
Your Current Organism:
Tistlia consotensis
NCBI taxonomy Id: 560819
Other names: T. consotensis USBA 355, Tistlia consotensis USBA 355, alpha proteobacterium USBA 355
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.