STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMF12510.1Tetratricopeptide repeat-containing protein. (302 aa)    
Predicted Functional Partners:
SMF79058.1
Two-component sensor histidine kinase, contains HisKA and HATPase domains.
  
 
 0.869
SMF12634.1
Pilus assembly protein CpaC; Belongs to the bacterial secretin family.
 
  
 0.783
SMF12535.1
Tight adherence protein B.
 
  
 0.710
ribB
3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
    
  0.709
SMF12647.1
Pilus assembly protein CpaB.
 
  
 0.700
SMF12522.1
Tight adherence protein C.
 
  
 0.690
SMF12552.1
Pilus assembly protein CpaE.
 
  
 0.681
SMF14488.1
HAMP domain-containing protein.
    
  0.661
SMF12675.1
Flp pilus assembly protein TadG.
 
  
 0.580
SMF12502.1
DNA-binding transcriptional regulator, MarR family.
       0.526
Your Current Organism:
Tistlia consotensis
NCBI taxonomy Id: 560819
Other names: T. consotensis USBA 355, Tistlia consotensis USBA 355, alpha proteobacterium USBA 355
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.