STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMF19166.1Transcriptional regulator, DeoR family. (329 aa)    
Predicted Functional Partners:
SMF27965.1
6-phosphofructokinase; Belongs to the carbohydrate kinase PfkB family.
 
  
 0.909
SME94798.1
Acetyltransferase.
    
   0.816
SMF21322.1
Ribose 5-phosphate isomerase B.
  
 
 0.656
SME93126.1
PTS IIA-like nitrogen-regulatory protein PtsN.
 
  
 0.584
SMF19152.1
Nucleotide-binding universal stress protein, UspA family.
       0.563
SMF19174.1
Spermidine/putrescine transport system substrate-binding protein.
 
     0.524
SMF21953.1
L-erythritol 4-phosphate dehydrogenase; Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family.
 
  
 0.481
SMF32820.1
Glyceraldehyde-3-phosphate dehydrogenase (NAD+); Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
    
 0.474
SMF29688.1
Phosphoglucomutase.
     
 0.472
SMF18740.1
Homodimeric glycerol 3-phosphate dehydrogenase (quinone); Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family.
 
  
 0.471
Your Current Organism:
Tistlia consotensis
NCBI taxonomy Id: 560819
Other names: T. consotensis USBA 355, Tistlia consotensis USBA 355, alpha proteobacterium USBA 355
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